Software

popgeninfer: Tests and simulations of genotyping platform bias
2023-05-08 - 2025-03-31. R.

simfam: Simulate and Model Family Pedigrees With Structured Founders
2021-07-30 - 2025-01-08. R, C++. Also on CRAN.

jackstraw: Jackstraw Statistical Inference for Unsupervised Learning
2020-12-23 - 2024-12-19. R.

gcatest: Genotype Conditional Association Test
2020-11-13 - 2024-10-29. R.

lfa: Logistic Factor Analysis for Categorical Data
2020-09-18 - 2024-10-29. R.

genio: Genetics Input/Output Functions
2019-03-15 - 2025-02-20. R, C++. Also on CRAN.

simtrait: Simulate Complex Traits from Genotypes
2019-02-13 - 2024-11-29. R. Also on CRAN.

popkin: Estimate Kinship and FST under Arbitrary Population Structure
2017-09-11 - 2024-10-02. R, C++. Also on CRAN.

bnpsd: Model and Simulate Admixed Populations
2017-09-11 - 2023-07-21. R. Also on CRAN.

dPUC2: Domain Prediction Using Context, Version 2
2014-09-18 - 2020-07-15. Perl, C.

RandProt: High-order Markov random models for protein sequences
2014-09-12 - 2019-09-12. Perl.

DomStratStats: Domain Stratified Statistics (q-values and local FDRs)
2014-06-23 - 2020-07-15. Perl.

simgenphen: Simulate Genotypes and Phenotypes
2021-08-27 - 2023-02-01. R.

genbin: R wrappers for binaries in genetics
2021-08-14 - 2024-11-09. R.

ligera: LIght GEnetic Robust Association
2020-06-26 - 2023-01-04. R, C++.

popkinsuppl: Supplement to "popkin" package
2019-05-22 - 2022-05-11. R.

kinshipsymbols: Math symbols for statistical genetics
2019-02-01 - 2024-11-20. LaTeX.

bias-assoc-paper: Kinship bias association project
2021-08-23 - 2023-02-19. R, bash, LaTeX, markdown.

data: Instructions for real data processing shared across projects
2019-09-04 - 2024-10-16. R, bash, Perl, markdown.

pca-assoc-paper: PCA association project
2019-08-29 - 2023-04-24. R, bash, LaTeX, markdown.

human-differentiation-manuscript: Human differentiation analysis
2019-04-25 - 2019-10-17. R, bash, markdown.