Posts by Collection

300 Yao Yiqi

000 Ochoa Alejandro

100 Sood Amika

200 Tu Tiffany

301 Hou Zhuoran

302 Shen Jiajie

400 Emmanuel Mokel

99 You

Computing van der Waals energies in the context of the rotamer approximation
Gevorg Grigoryan, Alejandro Ochoa, Amy E Keating
Proteins 68(4) 863-78. 2007-11-01

Using context to improve protein domain identification
Alejandro Ochoa, Manuel Llinás, Mona Singh
BMC Bioinformatics 12:90. 2011-03-31

Evolution and diversity in human herpes simplex virus genomes
Moriah L Szpara, Derek Gatherer, Alejandro Ochoa, Benjamin Greenbaum, Aidan Dolan, Rory J Bowden, Lynn W Enquist, Matthieu Legendre, Andrew J Davison
J Virol 88:1209-27. 2013-11-13

Beyond the E-value: stratified statistics for protein domain prediction
Alejandro Ochoa, John D Storey, Manuel Llinás, Mona Singh
PLoS Comput Biol 11 e1004509. 2015-11-17

Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite
Simon A Cobbold, Joana M Santos, Alejandro Ochoa, David H Perlman, Manuel Llinás
Sci Rep 2016;6:19722. 2016-01-27

F_ST and kinship for arbitrary population structures I: Generalized definitions
Alejandro Ochoa, John D Storey
bioRxiv doi:10.1101/083915. 2016-10-27

Domain prediction with probabilistic directional context
Alejandro Ochoa, Mona Singh
Bioinf 33(16) 2471-8. 2017-04-12

New kinship and F_ST estimates reveal higher levels of differentiation in the global human population
Alejandro Ochoa, John D Storey
bioRxiv doi:10.1101/653279. 2019-05-30

Testing the effectiveness of principal components in adjusting for relatedness in genetic association studies
Yiqi Yao, Alejandro Ochoa
bioRxiv doi:10.1101/858399. 2019-11-29

Estimating F_ST and kinship for arbitrary population structures
Alejandro Ochoa, John D Storey
PLoS Genet 17(1) e1009241. 2021-01-19

Correcting signal biases and detecting regulatory elements in STARR-seq data
Young-Sook Kim, Graham D Johnson, Jungkyun Seo, Alejandro Barrera, Thomas N. Cowart, William H Majoros, Alejandro Ochoa, Andrew S Allen, Timothy E Reddy
Genome Res 31(5) 877-889. 2021-05-01

HLA Loci and Recurrence of Focal Segmental Glomerulosclerosis In Pediatric Kidney Transplantation
Brian I Shaw, Alejandro Ochoa, Cliburn Chan, Chloe Nobuhara, Rasheed Gbadegesin, Annette M Jackson, Eileen T Chambers
Transplant Direct 7(10) e748. 2021-08-26

DomStratStats

RandProt

dPUC2

bnpsd

popkin

simtrait

genio

human-differentiation-manuscript

popkinsuppl

ligera

simfam

genbin

La Biología Molecular

Domain Prediction Using Context in Plasmodium falciparum

Forget the E-value: family-based q-values for protein domain prediction, and empirical error detection

Forget the E-value: q-values for domains

Forget the E-value: family-based q-values for protein domain prediction, and empirical error detection

Beyond the E-value: stratified statistics for protein domain prediction

F_ST generalized for arbitrary population structures

F_ST and kinship for arbitrary population structures

Measuring relatedness in human populations from DNA

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures (lightning talk)

Relatedness and differentiation in arbitrary population structures

Modeling Relatedness in Genetic Association Studies

Population Kinship and Differentiation in Human Studies

Master's Student Research in the Ochoa Lab

Statistical models and methods for human genetic data

Statistical Genetics Research: Kinship, Bias, Admixture