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Ochoa Alejandro

Yao Yiqi

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Computing van der Waals energies in the context of the rotamer approximation
Gevorg Grigoryan, Alejandro Ochoa, Amy E Keating
Proteins 68 (4), 863-78. 2007-11-01

Using context to improve protein domain identification
Alejandro Ochoa, Manuel Llinás, Mona Singh
BMC Bioinformatics 12:90. 2011-03-31

Evolution and diversity in human herpes simplex virus genomes
Moriah L Szpara, Derek Gatherer, Alejandro Ochoa, Benjamin Greenbaum, Aidan Dolan, Rory J Bowden, Lynn W Enquist, Matthieu Legendre, Andrew J Davison
J Virol 88:1209-1227. 2013-11-13

Beyond the E-value: stratified statistics for protein domain prediction
Alejandro Ochoa, John D Storey, Manuel Llinás, Mona Singh
PLoS Comput Biol 11 e1004509. 2015-11-17

Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite
Simon A Cobbold, Joana M Santos, Alejandro Ochoa, David H Perlman, Manuel Llinás
Sci Rep 2016;6:19722. 2016-01-27

F_ST and kinship for arbitrary population structures I: Generalized definitions
Alejandro Ochoa, John D Storey
bioRxiv doi:10.1101/083915. 2016-10-27

F_ST and kinship for arbitrary population structures II: Method of moments estimators
Alejandro Ochoa, John D Storey
bioRxiv doi:10.1101/083923. 2016-10-27

Domain prediction with probabilistic directional context
Alejandro Ochoa, Mona Singh
Bioinf 33(16) 2471-2478. 2017-04-12

New kinship and F_ST estimates reveal higher levels of differentiation in the global human population
Alejandro Ochoa, John D Storey
bioRxiv doi:10.1101/653279. 2019-05-30

DomStratStats

RandProt

dPUC2

bnpsd

popkin

simtrait

genio

human-differentiation-manuscript

popkinsuppl

La Biología Molecular

Domain Prediction Using Context in Plasmodium falciparum

Forget the E-value: family-based q-values for protein domain prediction, and empirical error detection

Forget the E-value: q-values for domains

Forget the E-value: family-based q-values for protein domain prediction, and empirical error detection

Beyond the E-value: stratified statistics for protein domain prediction

F_ST generalized for arbitrary population structures

F_ST and kinship for arbitrary population structures

Measuring relatedness in human populations from DNA

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures

Relatedness and differentiation in arbitrary population structures (lightning talk)

Relatedness and differentiation in arbitrary population structures